I didn't think that the body would get resized. The only difference is that your not touching the shoulder of the case. This the way I've been doing for years. If can find the instruction manual that came with my RCBS dies it also goes over on how you can use the the FL dies to neck size.
Put your case in the shell holder, make sure the die is backed all the way out where it just makes contact with the case mouth, raise the handle, screw the die in 1/2 turn and run the case into the die then raise the handle again and inspect the case, you will see a "ring" where the die has made contact with and sized the case neck, keep repeating and you will se the "ring" move down the neck toward the shoulder, make sure to stop before the ring makes contact with the shoulder and lock the die down. You may have to adjust the decap ,sizer stem, to make sure it sizes the inside of the neck on the stroke, and you may want to decap on a seperate step.